mixing interactive molecular dynamic (NAMD/IMD) and Augmented Reality (pyARToolkit and PMV) led to manipulate using a marker a polyalanine peptide anchor to another marker.
Short video showing the dna helix controled by an haptic device instead of another marker. Thus the demo is much more stable, but the framerate is lowered. This experiment was done in the PMV software, interfaced with Vision, ARToolkit, and a Phantom device (Sensable).
MGLTools PMV ( http://mgltools.scri pps.edu/ ) associated with ARToolKit ( http://mgldev.scripp s.edu/projects/pyart k/ ) permit to explore protein 3d structure in augmented reality context. This exemple depict how the DNA superhelix can be explored using two cube of marker. One define the DNA overall position and the other defined the helix parameter (rise,angle,etc..)
i like this animation. For the details it is a molecular dynamic (gromacs) play in reverse mode. I have produce the letter using http://bioserv.rpbs. jussieu.fr/~autin/cg i-bin/ABCgen that I have made for some reason..The rendering was done using VMD and gelato
OK a first test of my script which from a frameset of pygfile (produce in VMD) generate the ambiant occlusion and beauty pass. The movie display first the AO pass and then the multiply pass.
movie resulting of merging two output from the PMG (http://bioserv.rpbs .jussieu.fr/PMG), showing how inhibitor bind to DNA and then make rotate the complex.
idea from Richard Eudes (http://richardeudes .free.fr/wordpress/) .
The movie shows different representations mode for protein's structure (atom details, surface, schematic secondary structure)
this a simple representation of the pseudo-brownian move implemented in the ICM (Molsoft) software which is a rigid body move in a protein docking simulation
second movie of docking study on the tenase macromolecular system. This movie is a supplementary material for our paper : Autin L, Miteva MA, Lee WH, Mertens K, Radtke KP, Villoutreix BO. "Molecular models of the procoagulant factor VIIIa-factor IXa complex." J Thromb Haemost. 2005 Sep;3(9):2044-56.
http://www.blackw ell-synergy.com/doi/ abs/10.1111/j.1538-7 836.2005.01527.x
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You will discover natural remedies have been proven to assist for thousands of years in the prevention and cure of circulatory problems.
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