Latest videos by djodjin Videos and Resource Center

Augmented Reality Interactive MD Augmented Reality Interactive MD
Posted by: djodjin

Video duration: 32 seconds

mixing interactive molecular dynamic (NAMD/IMD) and Augmented Reality (pyARToolkit and PMV) led to manipulate using a marker a polyalanine peptide anchor to another marker.

Related: augmented reality, molecular dynamic, imd, interactive simulation, pmv, mgltools, namd, artoolkit

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DNA helix AR-haptic in PMV DNA helix AR-haptic in PMV
Posted by: djodjin

Video duration: 10 seconds

Short video showing the dna helix controled by an haptic device instead of another marker. Thus the demo is much more stable, but the framerate is lowered. This experiment was done in the PMV software, interfaced with Vision, ARToolkit, and a Phantom device (Sensable).

Related: dna, helix, ar, haptic, pmv, mgltools, molecular, modeling, augmented, reality, protein, molecule, interaction, atom, 3d

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flexible dna augmented reality experiment in MGLTools - PMV flexible dna augmented reality experiment in MGLTools - PMV
Posted by: djodjin

Video duration: 54 seconds

MGLTools PMV ( http://mgltools.scri pps.edu/ ) associated with ARToolKit ( http://mgldev.scripp s.edu/projects/pyart k/ ) permit to explore protein 3d structure in augmented reality context. This exemple depict how the DNA superhelix can be explored using two cube of marker. One define the DNA overall position and the other defined the helix parameter (rise,angle,etc..)

Related: dna, helix, superhelix, artoolkit, artoolkitplus, mgltools, pmv, flexible dna, augmented reality, molecular structure, 3d structure, molecular modeling

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fold fold
Posted by: djodjin

Video duration: 25 seconds

no description yet

Related: augemented, relaity

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dna helix dna helix
Posted by: djodjin

Video duration: 16 seconds

no description yet

Related: augemented, reality

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magic magnifier magic magnifier
Posted by: djodjin

Video duration: 26 seconds

last result of the magnifier effet, now keep the mask in the lens

Related: ar, artoolkit, pmv, python molecular viewer, molecular modeling, 3d, opengl

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fluid - protein solvation fluid - protein solvation
Posted by: djodjin

Video duration: 7 seconds

Another short animation using fluid simulation in blender2.49b....

Related: blender, fluid, molecul, solvation

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out out
Posted by: djodjin

Video duration: 13 seconds

test on magic lens (zoom and size)
temporary video
i will delete it soon

Related: out

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good good
Posted by: djodjin

Video duration: 8 seconds

temporary video

Related: good

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solvation solvation
Posted by: djodjin

Video duration: 5 seconds

blender fluid test (oil)...
I am just a newbee with that...but it seems really fun to use..

Related: blender, fluid, proteins, molecular dynamics, modeling, pdb, pmv, pytohn, molecular, viewer

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structural alphabet soupe structural alphabet soupe
Posted by: djodjin

Video duration: 20 seconds

i like this animation. For the details it is a molecular dynamic (gromacs) play in reverse mode. I have produce the letter using http://bioserv.rpbs. jussieu.fr/~autin/cg i-bin/ABCgen that I have made for some reason..The rendering was done using VMD and gelato

Related: structural, alphabet, soupe, molecular, dynamique, 3d, gelato, vmd

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VMD-gelato molecular dynamic TEST VMD-gelato molecular dynamic TEST
Posted by: djodjin

Video duration: 21 seconds

OK a first test of my script which from a frameset of pygfile (produce in VMD) generate the ambiant occlusion and beauty pass. The movie display first the AO pass and then the multiply pass.

Related: protein, 3d, gelato, molecular, graphism, modeling, dynamic, vmd, ambiant, occlusionn

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molecule men dance rock\ molecule men dance rock'n roll
Posted by: djodjin

Video duration: 35 seconds

i have finally made it, but the biped enveloppe is not perfect. For a first shot it is ok!

Related: molecule, dance, danse, 3d, graphism, molecular

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Molecule men Molecule men
Posted by: djodjin

Video duration: 4 seconds

some fun in molecular modeling. Thats my first test, without music...

Related: molecule, dancing, 3d, molecular, graphism, modeling, protein, amino, acids

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blood circulation blood circulation
Posted by: djodjin

Video duration: 18 seconds

This is another blood movie, this time the camera is outside the vessel.

Related: blood, cell, platelet, 3d, coagulation

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PMG movie 2 PMG movie 2
Posted by: djodjin

Video duration: 20 seconds

movie resulting of merging two output from the PMG (http://bioserv.rpbs .jussieu.fr/PMG), showing how inhibitor bind to DNA and then make rotate the complex.

Related: pmg, docking, protein, 3d, molecular, structure, modeling

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blood blood
Posted by: djodjin

Video duration: 29 seconds

my first movie on blood circulation. The platelet are not well modelized...

Related: blood, cell, platelet, 3d, movie

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Surface trip Surface trip
Posted by: djodjin

Video duration: 33 seconds

Trip on the molecular surface of protein

Related: protein, 3d, surface, molecular, structure, graphism, mesh, camera, drug, pocket, design, molecule, macromolecule, atom

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Secondary Structure Secondary Structure
Posted by: djodjin

Video duration: 6 seconds

idea from Richard Eudes (http://richardeudes .free.fr/wordpress/) .
The movie shows different representations mode for protein's structure (atom details, surface, schematic secondary structure)

Related: protein, structure, 3d, representations

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rigid body move rigid body move
Posted by: djodjin

Video duration: 16 seconds

this a simple representation of the pseudo-brownian move implemented in the ICM (Molsoft) software which is a rigid body move in a protein docking simulation

Related: rigid-body, protein, docking

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ATOMIC ATOMIC
Posted by: djodjin

Video duration: 113 seconds

3d film made for the biofestival Picture 2004 (http://www.biopictu re.com/)

Related: 3d, atom, protein, structure, docking, blood, coagulation

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tenase movie 2 tenase movie 2
Posted by: djodjin

Video duration: 23 seconds

second movie of docking study on the tenase macromolecular system. This movie is a supplementary material for our paper : Autin L, Miteva MA, Lee WH, Mertens K, Radtke KP, Villoutreix BO. "Molecular models of the procoagulant factor VIIIa-factor IXa complex." J Thromb Haemost. 2005 Sep;3(9):2044-56.
http://www.blackw ell-synergy.com/doi/ abs/10.1111/j.1538-7 836.2005.01527.x

Related: docking, protein, 3d, movie, coagulation, structure

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Tenase movie 1 Tenase movie 1
Posted by: djodjin

Video duration: 45 seconds

tenase movie

Related: structure, 3d, docking, protein, movie

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